%% UA doctoral thesis template to accompany uamaththesis.cls
%% last updated April 2018. Please suggest corrections, changes and
%% improvements to Dan Luecking, SCEN 354.

% Load the class file. This takes the options "chapters", "MS", "MA, and
% "PhD". The last 3 are mutually exclusive and PhD is the default.
% The chapters option indicates that your thesis has chapter subdivisions.
% If it is present, this class loads the LaTeX report class, otherwise
% it loads the article class. In either case, it is loaded with the
% "12pt" option.
%
% The MS and MA options indicates that this is a Master's thesis rather
% than a doctoral dissertation. This has not been thoroughly tested.
% Pretty much all they do is to substitute "thesis" for "dissertation" in
% a few commands and text. They also sets the default name of the
% degree, if you don't provide one (see \degreename below)
%
% Any other options are passed directly to the loaded class: article or
% report
%
\documentclass{uamaththesis}

% Loading packages (amsmath, amssymb, amsthm, setspace, and tocbibind
% are already preloaded). Do _not_ use tocloft unless you know how to
% customize it to satisfy the UA thesis requirements.
%
% For more flexibility in number formating, load the enumerate package.
% However, make sure you satisfy the Grad school thesis checkers.
\usepackage{enumerate} 
\usepackage{amsmath,amssymb,amsthm,enumerate,graphicx}
\usepackage[all]{xy}
\usepackage{calligra,mathrsfs}
\usepackage[hidelinks]{hyperref}
\usepackage{bm,color}
\usepackage{amsfonts}
\usepackage{amscd}
\usepackage[latin2]{inputenc}
\usepackage{t1enc}
\usepackage[mathscr]{eucal}
\usepackage{indentfirst}
\usepackage{graphics}
\usepackage{pict2e}
\usepackage{epic}
\numberwithin{equation}{section}
%\usepackage[margin=2.9cm]{geometry}
\usepackage{epstopdf} 
\usepackage{tikz-cd}
\usepackage{tikz}
\usetikzlibrary{shapes,arrows}
\usetikzlibrary{decorations.markings}
\usepackage{mathtools}
\usepackage{cases, caption}
\allowdisplaybreaks

\tikzset{degil/.style={line width=0.75pt,double distance=2pt,
        decoration={markings,
        mark= at position 0.5 with {
              \node[transform shape] (tempnode) {$\backslash$};
              %\draw[thick] (tempnode.north east) -- (tempnode.south west);
              }
          },
          postaction={decorate}
}
}

\tikzset{
commutative diagrams/.cd,
arrow style=tikz,
diagrams={>=open triangle 45, line width=0.5pt, double distance=2pt}}


% your definitions
%\newcommand{\disk}{\mathbb{D}} % for example

\theoremstyle{question}
\newtheorem{question}[theorem]{Question}

\theoremstyle{setup}
\newtheorem{setup}[theorem]{Set-up}

\theoremstyle{conjecture}
\newtheorem{conjecture}[theorem]{Conjecture}


%%% to repeat theorem

\theoremstyle{ams-restatedtheorem}
% the argument of restatedtheorem* shouldn't ever actually be used
\newtheorem*{restatedtheorem*}{}
\newenvironment{restatement}[2][]{%
 \ifempty{#1}
  \begin{restatedtheorem*}[\autoref*{#2}]%
 \else%
  \begin{restatedtheorem*}[\autoref*{#2} (#1)]%
 \fi%
}%
{\end{restatedtheorem*}}
\makeatother

%%% Shortcuts and symbols

\newcommand{\widesim}[2][1.5]{
  \mathrel{\overset{#2}{\scalebox{#1}[1]{$\sim$}}}
}

\newcommand\norm[1]{\left\lVert#1\right\rVert}
\newcommand{\calA}{ \mathcal{ A }  } 
\newcommand{\calB}{ \mathcal{ B }  } 
\newcommand{\la}{\langle}
\newcommand{\ra}{\rangle}
\newcommand{\NN}{\mathbb{N}}
\newcommand{\QQ}{\mathbb{Q}}
\newcommand{\RR}{\mathbb{R}}
\newcommand{\ZZ}{\mathbb{Z}}
\newcommand{\CC}{\mathbb{C}}
\newcommand{\RP}{\mathbb{RP}}
\newcommand{\PP}{\mathbb{P}}
\newcommand{\Hom}{\text{Hom}}
\newcommand{\bs}{\backslash}
\newcommand{\mf}{\mathfrak}
\newcommand{\mc}{\mathcal}
\newcommand{\grade}{\text{grade}}
\newcommand{\depth}{\text{depth}}
\newcommand{\height}{\text{height}}

\newcommand{\sbt}{\,\begin{picture}(-1,1)(-1,-2)\circle*{2}\end{picture}\ }

\DeclareMathOperator{\Homs}{\mathscr{H}\text{\kern -3pt {\calligra\large om}}\,}
\DeclareSymbolFont{extraup}{U}{zavm}{m}{n}
\DeclareMathSymbol{\varheart}{\mathalpha}{extraup}{86}
\DeclareMathSymbol{\vardiamond}{\mathalpha}{extraup}{87}
\DeclareMathSymbol{\varspade}{\mathalpha}{extraup}{81}

% Theorem-like environments:
% These are predefined, but you may redo any of them with shorter names
% if you prefer. (Note: latex does not allow you to redefine a
% theorem-like environment, so if you want to change the style of one of
% these, use a different name, e.g. prop instead of proposition)
%  \theoremstyle{plain}
%\newtheorem{theorem}{Theorem}[section]
%\newtheorem{proposition}[theorem]{Proposition}
%\newtheorem{corollary}[theorem]{Corollary}
%\newtheorem{lemma}[theorem]{Lemma}
%  \theoremstyle{definition}
%\newtheorem{definition}{Definition}[section]
%\newtheorem{example}{Example}[section]
%  \theoremstyle{remark}
%\newtheorem{remark}{Remark}

% Your thesis title:
% You must use title case: generally every word is capitalized
% except articles (the, a, an) prepositions (of, to, in, with, for, etc.)
% and conjunctions (and, or, but, while, etc.)
% Required.
\title{THESIS TITLE}

% Your name as UAConnect knows you:
% Required.
\author{NAME HERE}

% information about your bachelors degree or the equivalent.
% Required.
\bachelorinstitution{UNIVERSITY NAME}
\bachelordegree{DEGREE}
\bacheloryear{YEAR}
%
% If you have more than one bachelors degree:
%\bachelorinstitutiontwo{Medium State University}
%\bachelordegreetwo{Bachelor of Science in Science}
%\bacheloryeartwo{2011}
% and so on, up to \bachelor...three

% information about your masters or other post baccalariat degree.
% Required if you have one.
\masterinstitution{UNIVERSITY NAME}
\masterdegree{DEGREE}
\masteryear{YEAR}
%
% If you have more than one masters degree:
%\masterinstitutiontwo{University of Alabama}
%\masterdegreetwo{Master of Arts in Art}
%\masteryeartwo{2015}
% and so on up to \master...three
% If you have a previous PhD, use the next available \master...
% commands for it.
%
% Name of degree plus month and year of the final approval.
% Required.
%\degreename{Master of Science in Mathematics}
\degreename{Doctor of Philosophy in Mathematics}
\date{DATE}

% Your advisor
% Required.
% Use the first for masters, the second for PhD.
%\thesisdirector{Luigi N. Mario, M.F.A.} % for master's degree.
% or
\dissertationdirector{ADVISOR NAME.}

% Your dissertation/thesis committee. Titles used to be required (Dr. or Prof.
% unless neither applies). But now they seem to want just the highest degree
% earned after the name.
% Two required, extras are optional. I have made provision for up to
% four
\committeememberone{COMMITTEE MEMBER NAME.}
\committeemembertwo{COMMITTEE MEMBER NAME.}
%\committeememberthree{Dr.\ Mario N. Luigi}
%\committeememberfour{Luigi N. Mario, M.F.A.}

\begin{document}

% Start of dissertation/thesis. The \frontmatter command turns off page
% numbering until the \mainmatter command. This is the style mandated
% by the UA dissertation guide. Do not complain to me.
% Required:
\frontmatter
\maketitle

% The grad school now requires the right margins not be justified.
% The \raggedright command is rather inelegant. One can get more
% control of "raggedness" using the ragged2e package.
% Required if some package you used turns it off:
%\raggedright
%\parindent 20pt % reset indentation removed by previous command

% The abstract. Should be less than one page, but this is not forced.
% Required.
\include{Abstract}

% Acknowledgements. Usually less than one page
% Not required, but I've never seen a thesis without one.
\include{Acknowledgment}


% Table of Contents.
% Required:
\tableofcontents
% Other lists if applicable:
% \listoftables
% etc.
%
% Signals start of actual thesis. Starts up page numbering.
% Required:
\mainmatter

% Introductory section or chapter.
% An introduction is not required but very highly recommended. A
% thesis consisting of reproduced published articles *must* include
% a section titled "Introduction" separate from those articles:
% \chapter{Introduction} or
% \section{Introduction}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Put the rest of the theses here. Several more sections %
% (chapters) containing actual mathematics and proofs.   %


\include{Chapter_1}

\include{Conclusion}

\include{Appendix_A}

\include{Appendix_B}


%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% If you load a package that changes the behavior of citations and
% bibliography formatting, the following two commands may be necessary
% (and shouldn't hurt). Adjust the first fraction if the Grad School
% hassles you about spacing between references.
\singlespacing
\setlength{\itemsep}{.75\baselineskip plus .2\baselineskip minus .1\baselineskip}
%
% If no biblography package is loaded, the references will be formatted
% as a section, starting on a new page. If you want it formatted as a
% new chapter, let me know, but expect the grad school to complain about
% the formating in the table of contents.
%
% If you prefer the References section to be labelled something else:
%\renewcommand{\refname}{Bibliography}% "Works Cited" is another possibility.
%
% The reference section is required to be listed in the TOC, and an added
% package may change that. If so the following may be needed just before
% the bibliography:
%   \clearpage
%   \addcontentsline{toc}{section}{\refname}%
%
% The closing "thebibliography" environment can be completely replaced
% (if you use BibTeX) by
% \bibliographstyle{plain}% for example, or amsplain or whatever.
% \bibliography{nameoffile}% name of your .bib data file
% If you use natbib package, use a comatible style, e.g., plainnat
%
\bibliographystyle{plain}
\bibliography{reference.bib}

%
% Appendices go after
%\appendix
% If chapters are used:
%\chapter{Some more stuff}% Appendix A
% otherwise
%\section{Some more stuff}% Appendix A
%
\end{document}